Publications

2022

Yuan-ting Wu, Hannah C. Bennett, Uree Chon, Daniel J. Vanselow, Qingguang Zhang, Rodrigo Munoz-Castaneda, Keith C. Cheng, Pavel Osten, Patrick J. Drew, Yongsoo Kim.
The cellular architecture of microvessels, pericytes and neuronal cell types in organizing regional brain energy homeostasis in mice
Cell Reports, Accepted, (2022)
https://www.biorxiv.org/content/10.1101/2021.05.19.444854v1

Son S, Manjila S, Newmaster KT, Wu T, Vanselow DJ, Ciarletta M, Cheng KC, Kim Y.
Wiring diagram of the oxytocin system in the mouse brain.
Journal of Neuroscience, Accepted, (2022)
https://www.biorxiv.org/content/10.1101/2020.10.01.320978v1

Bennett HC, Kim Y
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging
Neurophotonics (2022)
https://doi.org/10.1117/1.NPh.9.2.021902

Newmaster KT, Kronman FA, Wu Y, Kim Y
Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain
Frontier in Neuroanatomy (2022)
https://www.frontiersin.org/articles/10.3389/fnana.2021.787601/full

2021

Muñoz-Castañeda R, Zingg B, Matho KS, Wang Q, Chen X, Foster NN, Narasimhan A, Li A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park Y, Bienkowski MS, Chon U, Wheeler DW, Li X, Wang Y, Kelly K, An X, Attili SM, Bowman I, Bludova A, Cetin A, Ding L, Drewes R, D’Orazi F, Elowsky C, Fischer S, Galbavy W, Gao L, Gillis J, Groblewski PA, Gou L, Hahn JD, Hatfield JT, Hintiryan H, Huang J, Kondo H, Kuang X, Lesnar P, Li X, Li Y, Lin M, Liu L, Lo D, Mizrachi J, Mok S, Naeemi M, Nicovich PR, Palaniswamy R, Palmer J, Qi X, Shen E, Sun Y, Tao H, Wakemen W, Wang Y, Xie P, Yao S, Yuan J, Zhu M, Ng L, Zhang LI, Lim BK, Hawrylycz M, Gong H, Gee JC, Kim Y, Peng H, Chuang K, Yang XW, Luo Q, Mitra PP, Zador AM, Zeng H, Ascoli GA, Huang ZJ, Osten P, Harris JA, Dong H
Cellular Anatomy of the Mouse Primary Motor Cortex
Nature (2021)
https://www.nature.com/articles/s41586-021-03970-w

Cui Q, Du X, Chang I, Pamukcu A, Lilascharoen V, Berceau B, Garcia D, Hong D, Chon U, Narayanan A, Kim Y, Lim B, Chan S
Striatal Direct Pathway Targets Npas1+ Pallidal Neurons
Journal of Neuroscience. (2021)
https://pubmed.ncbi.nlm.nih.gov/33731445/

Bennett HC, Kim Y
Pericytes Across the Lifetime in the Central Nervous System
Frontier in Cellular Neuroscience, (2021)
https://www.frontiersin.org/articles/10.3389/fncel.2021.627291/full

2020

Chon U, LaFever BJ, Nguyen U, Kim Y#, Imamura F#
Topographically distinct projection patterns of early- and late-generated projection neurons in the mouse olfactory bulb
eNeuro, (2020)
https://pubmed.ncbi.nlm.nih.gov/33158934/
#Corresponding authors

Jefferson SJ, Feng M, Chon U, Guo Y, Kim Y, Luscher B. Disinhibition of somatostatin interneurons confers resilience to stress in male but not female mice.
Neurobiology of Stress, (2020)
https://pubmed.ncbi.nlm.nih.gov/33344694/

Newmaster K, Nolan ZT, Chon U, Vanselow DJ, Weit AR, Tabbaa M, Hidema S, Nishimori K, Hammock EAD, Kim Y. Quantitative Cellular-Resolution Map of the Oxytocin Receptor in Postnatally Developing Mouse Brains.
Nature Communications, (2020)
https://www.ncbi.nlm.nih.gov/pubmed/32313029

2019

Chon U, Vanselow DJ, Cheng KC, Kim Y. Enhanced and Unified Anatomical Labeling for a Common Mouse Brain Atlas
Nature Communications:, 2019
https://www.ncbi.nlm.nih.gov/pubmed/31699990

Zhao C, Son S, Kim Y, Prince J. iSMORE: an iterative self super-resolution algorithm (2019)
Simulation and Synthesis in Medical Imaging. (Conference Paper)
https://link.springer.com/chapter/10.1007/978-3-030-32778-1_14

Abecassis Z, Berceau B, Win P, Garcia D, Xenias H, Cui Q, Pamucku A, Hernández V, Chon U, Lim BK, Kim Y, Justice N, Awatramani R, Chan S. Npas1+-Nkx2.1+ Neurons Are an Integral Part of the Cortico-pallido-cortical Loop. (2019)
Journal of Neuroscience
https://www.ncbi.nlm.nih.gov/pubmed/31811030

Zhang XM, Anwar S, Kim Y, Brown J, Comte I, Cai H, Cai NN, Wade-Martins R, Szele FG. The A30P α-synuclein mutation decreases subventricular zone proliferation (2019)
Human Molecular Genetics
https://www.ncbi.nlm.nih.gov/pubmed/31267130

2018

Kelly SM, Raudales R, He M, Lee J, Kim Y, Gibb LG, Wu P, Matho P, Osten P, Graybiel AM, Huang ZJ. Radial glial lineage progression and differential intermediate progenitor amplification underlie striatal compartments and circuit organization (2018). Neuron.
https://www.ncbi.nlm.nih.gov/pubmed/30017396

Hoerder-Suabedissen A, Hayashi S, Upton L, Nolan Z, Casas-Torremocha D, Grant E, Viswanathan S, Kanold PO, Clasca F, Kim Y, Zoltan Molnar. Subset of cortical layer 6b neurons selectively innervates higher order thalamic nuclei in mice (2018). Cerebral Cortex.
https://www.ncbi.nlm.nih.gov/pubmed/29481606
Selected for a cover image

2017

Kim Y#, Yang GR#, Pradhan K, Umadevi Venkataraju K, Bota M, Garcia del Molino LC, Fitzgerald G, Ram K, He M, Levine J, Mitra P, Huang ZJ, Wang X, Osten P. Whole Brain Maps Uncover Cell Type-based Cortical Architecture and Sexual Dimorphism (2017). Cell. #Equal contribution.
https://www.ncbi.nlm.nih.gov/pubmed/28985566

2016

He M, Tucciarone J, Lee S, Nigro MJ, Kim Y, Levine JM, Kelly SM, Krugikov I, Wu P, Chen Y, Gong L, Hou Y, Osten P, Rudy B, Huang ZJ. Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. (2016). Neuron
http://www.ncbi.nlm.nih.gov/pubmed/27618674

Kim Y#, Perova Z#, Mirrione MM#, Pradhan K, Henn FA, Shea S, Osten P, Li B. Whole-brain mapping of neuronal activity in the learned helplessness model of depression (2016). Front Neural Circuits, 10:3, #Equal contribution.
http://www.ncbi.nlm.nih.gov/pubmed/26869888

Jeong M#, Kim Y#, Kim J, Ferrante DD, Mitra PP, Osten P, Kim D. Comparative three dimensional connectome map of motor cortical projections in the mouse brain (2016). Scientific Reports, 6:20072, # Equal contribution
http://www.ncbi.nlm.nih.gov/pubmed/26830143

Before Penn State

Kim Y, Umadevi Venkataraju K, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland K, Seung HS, Osten P. Mapping social behavior-induced brain activation at cellular resolution in the mouse (2015). Cell Reports 10(2):292-305.
http://www.ncbi.nlm.nih.gov/pubmed/25558063
Selected as one of the best 11 papers published in Cell Reports in 2015

Ragan T, Kadiri L, Umadevi Venkataraju K, Bahlmann K, Sutin J, Taranda J, Arganda-Carreras I, Kim Y, Seung HS, Osten P. Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging (2012). Nature Methods15;9(3):255-8
http://www.ncbi.nlm.nih.gov/pubmed/22245809

Comte I, Kim Y, Young CC, Bolam PJ, van der Harg JM, Hockberger P, Poirier F, Szele FG. Galectin-3 maintains cell motility from the subventricular zone to the olfactory bulb (2011) Journal of Cell Science 124(Pt 14):2438-47
http://www.ncbi.nlm.nih.gov/pubmed/21693585

James R, Kim Y, Hockberger P, Szele FG. SVZ neuroblast cell migration: lessons from quantitative 2-photon microscopy (2011). Frontiers in Neuroscience. 5:30
http://www.ncbi.nlm.nih.gov/pubmed/21472025

Walker AS, Goings GE, Kim Y, Miller RJ, Chenn A, Szele FG. Transgenic nestin reporter mouse labels multiple central nervous system precursor cells (2011). Neural Plasticity, 2010:894374
http://www.ncbi.nlm.nih.gov/pubmed/21527990

Martinez-Molina N, Kim Y, Hockberger P, Szele FG. Rostral Migratory Stream Neuroblasts Turn and Change Directions in Stereotypic Patterns. (2011) Cell Adhesion and Migration 5(1):83-95
http://www.ncbi.nlm.nih.gov/pubmed/21045564

Kim Y, Wang W, Comte I, Pastrana E, Tran PB, Brown J, Miller R, Doetsch F, Molnar Z, Szele FG. Dopamine stimulates postnatal murine subventricular zone neurogenesis via the D3 receptor (2010). Journal of Neurochemistry 114:750-760
http://www.ncbi.nlm.nih.gov/pubmed/20477937

Kim Y, Comte I, Szabo G, Hockberger P, Szele FG. Adult mouse subventricular zone stem and progenitor cells are static and epidermal growth factor receptor negatively regulates neuroblast migration (2009). Plos One 4:e8122
http://www.ncbi.nlm.nih.gov/pubmed/19956583

Kim Y, Szele FG. Activation of subventricular zone stem cells after neuronal injury (2008). Cell and Tissue Research 331:337-345. 2008
http://www.ncbi.nlm.nih.gov/pubmed/17694326

Nam SC, Kim Y, Dryanovski D, Walker A, Goings G, Woolfrey K, Kang SS, Chu C, Chenn A, Erdelyi F, Szabo G, Hockberger P, Szele FG. Dynamic features of postnatal subventricular zone cell motility: a two-photon time-lapse study (2007). Journal of Comparative Neurology 505:190-208
http://www.ncbi.nlm.nih.gov/pubmed/17853439