Yuan-ting Wu, Hannah C. Bennett, Uree Chon, Daniel J. Vanselow, Qingguang Zhang, Rodrigo Munoz-Castaneda, Keith C. Cheng, Pavel Osten, Patrick J. Drew, Yongsoo Kim.
The cellular architecture of microvessels, pericytes and neuronal cell types in organizing regional brain energy homeostasis in mice
Cell Reports, Accepted, (2022)

Son S, Manjila S, Newmaster KT, Wu T, Vanselow DJ, Ciarletta M, Cheng KC, Kim Y.
Wiring diagram of the oxytocin system in the mouse brain.
Journal of Neuroscience, Accepted, (2022)

Bennett HC, Kim Y
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging
Neurophotonics (2022)

Newmaster KT, Kronman FA, Wu Y, Kim Y
Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain
Frontier in Neuroanatomy (2022)


Muñoz-Castañeda R, Zingg B, Matho KS, Wang Q, Chen X, Foster NN, Narasimhan A, Li A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park Y, Bienkowski MS, Chon U, Wheeler DW, Li X, Wang Y, Kelly K, An X, Attili SM, Bowman I, Bludova A, Cetin A, Ding L, Drewes R, D’Orazi F, Elowsky C, Fischer S, Galbavy W, Gao L, Gillis J, Groblewski PA, Gou L, Hahn JD, Hatfield JT, Hintiryan H, Huang J, Kondo H, Kuang X, Lesnar P, Li X, Li Y, Lin M, Liu L, Lo D, Mizrachi J, Mok S, Naeemi M, Nicovich PR, Palaniswamy R, Palmer J, Qi X, Shen E, Sun Y, Tao H, Wakemen W, Wang Y, Xie P, Yao S, Yuan J, Zhu M, Ng L, Zhang LI, Lim BK, Hawrylycz M, Gong H, Gee JC, Kim Y, Peng H, Chuang K, Yang XW, Luo Q, Mitra PP, Zador AM, Zeng H, Ascoli GA, Huang ZJ, Osten P, Harris JA, Dong H
Cellular Anatomy of the Mouse Primary Motor Cortex
Nature (2021)

Cui Q, Du X, Chang I, Pamukcu A, Lilascharoen V, Berceau B, Garcia D, Hong D, Chon U, Narayanan A, Kim Y, Lim B, Chan S
Striatal Direct Pathway Targets Npas1+ Pallidal Neurons
Journal of Neuroscience. (2021)

Bennett HC, Kim Y
Pericytes Across the Lifetime in the Central Nervous System
Frontier in Cellular Neuroscience, (2021)


Chon U, LaFever BJ, Nguyen U, Kim Y#, Imamura F#
Topographically distinct projection patterns of early- and late-generated projection neurons in the mouse olfactory bulb
eNeuro, (2020)
#Corresponding authors

Jefferson SJ, Feng M, Chon U, Guo Y, Kim Y, Luscher B. Disinhibition of somatostatin interneurons confers resilience to stress in male but not female mice.
Neurobiology of Stress, (2020)

Newmaster K, Nolan ZT, Chon U, Vanselow DJ, Weit AR, Tabbaa M, Hidema S, Nishimori K, Hammock EAD, Kim Y. Quantitative Cellular-Resolution Map of the Oxytocin Receptor in Postnatally Developing Mouse Brains.
Nature Communications, (2020)


Chon U, Vanselow DJ, Cheng KC, Kim Y. Enhanced and Unified Anatomical Labeling for a Common Mouse Brain Atlas
Nature Communications:, 2019

Zhao C, Son S, Kim Y, Prince J. iSMORE: an iterative self super-resolution algorithm (2019)
Simulation and Synthesis in Medical Imaging. (Conference Paper)

Abecassis Z, Berceau B, Win P, Garcia D, Xenias H, Cui Q, Pamucku A, Hernández V, Chon U, Lim BK, Kim Y, Justice N, Awatramani R, Chan S. Npas1+-Nkx2.1+ Neurons Are an Integral Part of the Cortico-pallido-cortical Loop. (2019)
Journal of Neuroscience

Zhang XM, Anwar S, Kim Y, Brown J, Comte I, Cai H, Cai NN, Wade-Martins R, Szele FG. The A30P α-synuclein mutation decreases subventricular zone proliferation (2019)
Human Molecular Genetics


Kelly SM, Raudales R, He M, Lee J, Kim Y, Gibb LG, Wu P, Matho P, Osten P, Graybiel AM, Huang ZJ. Radial glial lineage progression and differential intermediate progenitor amplification underlie striatal compartments and circuit organization (2018). Neuron.

Hoerder-Suabedissen A, Hayashi S, Upton L, Nolan Z, Casas-Torremocha D, Grant E, Viswanathan S, Kanold PO, Clasca F, Kim Y, Zoltan Molnar. Subset of cortical layer 6b neurons selectively innervates higher order thalamic nuclei in mice (2018). Cerebral Cortex.
Selected for a cover image


Kim Y#, Yang GR#, Pradhan K, Umadevi Venkataraju K, Bota M, Garcia del Molino LC, Fitzgerald G, Ram K, He M, Levine J, Mitra P, Huang ZJ, Wang X, Osten P. Whole Brain Maps Uncover Cell Type-based Cortical Architecture and Sexual Dimorphism (2017). Cell. #Equal contribution.


He M, Tucciarone J, Lee S, Nigro MJ, Kim Y, Levine JM, Kelly SM, Krugikov I, Wu P, Chen Y, Gong L, Hou Y, Osten P, Rudy B, Huang ZJ. Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. (2016). Neuron

Kim Y#, Perova Z#, Mirrione MM#, Pradhan K, Henn FA, Shea S, Osten P, Li B. Whole-brain mapping of neuronal activity in the learned helplessness model of depression (2016). Front Neural Circuits, 10:3, #Equal contribution.

Jeong M#, Kim Y#, Kim J, Ferrante DD, Mitra PP, Osten P, Kim D. Comparative three dimensional connectome map of motor cortical projections in the mouse brain (2016). Scientific Reports, 6:20072, # Equal contribution

Before Penn State

Kim Y, Umadevi Venkataraju K, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland K, Seung HS, Osten P. Mapping social behavior-induced brain activation at cellular resolution in the mouse (2015). Cell Reports 10(2):292-305.
Selected as one of the best 11 papers published in Cell Reports in 2015

Ragan T, Kadiri L, Umadevi Venkataraju K, Bahlmann K, Sutin J, Taranda J, Arganda-Carreras I, Kim Y, Seung HS, Osten P. Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging (2012). Nature Methods15;9(3):255-8

Comte I, Kim Y, Young CC, Bolam PJ, van der Harg JM, Hockberger P, Poirier F, Szele FG. Galectin-3 maintains cell motility from the subventricular zone to the olfactory bulb (2011) Journal of Cell Science 124(Pt 14):2438-47

James R, Kim Y, Hockberger P, Szele FG. SVZ neuroblast cell migration: lessons from quantitative 2-photon microscopy (2011). Frontiers in Neuroscience. 5:30

Walker AS, Goings GE, Kim Y, Miller RJ, Chenn A, Szele FG. Transgenic nestin reporter mouse labels multiple central nervous system precursor cells (2011). Neural Plasticity, 2010:894374

Martinez-Molina N, Kim Y, Hockberger P, Szele FG. Rostral Migratory Stream Neuroblasts Turn and Change Directions in Stereotypic Patterns. (2011) Cell Adhesion and Migration 5(1):83-95

Kim Y, Wang W, Comte I, Pastrana E, Tran PB, Brown J, Miller R, Doetsch F, Molnar Z, Szele FG. Dopamine stimulates postnatal murine subventricular zone neurogenesis via the D3 receptor (2010). Journal of Neurochemistry 114:750-760

Kim Y, Comte I, Szabo G, Hockberger P, Szele FG. Adult mouse subventricular zone stem and progenitor cells are static and epidermal growth factor receptor negatively regulates neuroblast migration (2009). Plos One 4:e8122

Kim Y, Szele FG. Activation of subventricular zone stem cells after neuronal injury (2008). Cell and Tissue Research 331:337-345. 2008

Nam SC, Kim Y, Dryanovski D, Walker A, Goings G, Woolfrey K, Kang SS, Chu C, Chenn A, Erdelyi F, Szabo G, Hockberger P, Szele FG. Dynamic features of postnatal subventricular zone cell motility: a two-photon time-lapse study (2007). Journal of Comparative Neurology 505:190-208